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1

Contrasting the Genetic Background of Type 1 Diabetes and Celiac Disease Autoimmunity

Gutierrez-Achury, Javier, Romanos, Jihane, Bakker, Sjoerd F., Kumar, Vinod, de Haas, Esther C., Trynka, Gosia, Ricaño-Ponce, Isis, Steck, Andrea, Chen, Wei-Min, Onengut-Gumuscu, Suna, Simsek, Suat, Re

Journal:

Year:

2015

Language:

english

File:

PDF, 2.17 MB

english, 2015

2

Recent advances in the immunogenetics of human type 1 diabetes

Suna Onengut-Gumuscu, Patrick Concannon

Journal:

Current Opinion in Immunology

Year:

2006

Language:

english

File:

PDF, 146 KB

english, 2006

3

Mapping genes for autoimmunity in humans: type 1 diabetes as a model

Suna Onengut-Gumuscu, Patrick Concannon

Journal:

Immunological Reviews

Year:

2002

Language:

english

File:

PDF, 184 KB

english, 2002

4

A functional polymorphism (1858C/T) in the PTPN22 gene is linked and associated with type I diabetes in multiplex families

Onengut-Gumuscu, S, Ewens, K G, Spielman, R S, Concannon, P

Journal:

Genes and Immunity

Year:

2004

Language:

english

File:

PDF, 80 KB

english, 2004

5

OR.38. Alteration in T‐Cell Activation Profiles and Lymphocyte Phenotypes Are Functional Correlates of the 1858 C to T Mutation of Ptpn22

Mary Rieck, Suna Onengut-Gumuscu, Jennifer Gorman, Carla Greenbaum, Pat Concannon, Jane Buckner

Journal:

Clinical Immunology

Year:

2006

Language:

english

File:

PDF, 70 KB

english, 2006

6

Decrease in Memory B Cell Frequency and Activation is Associated with PTPN22 1858T Variant in Healthy Subjects

Mary Rieck, Patric Concannon, Adrian Arechiga, Jane Buckner, Suna Onengut-Gumuscu

Journal:

Clinical Immunology

Year:

2007

Language:

english

File:

PDF, 37 KB

english, 2007

7

The genetics of type 1 diabetes: Lessons learned and future challenges

Suna Onengut-Gumuscu, Patrick Concannon

Journal:

Journal of Autoimmunity

Year:

2005

Language:

english

File:

PDF, 210 KB

english, 2005

8

A functional variant of IRS1 is associated with type 1 diabetes in families from the US and UK

V.Anne Morrison, Suna Onengut-Gumuscu, Patrick Concannon

Journal:

Molecular Genetics and Metabolism

Year:

2004

Language:

english

File:

PDF, 122 KB

english, 2004

9

127 Genetic Variation Associated Medically Refractory Ulcerative Colitis Requiring Colectomy

Haritunians, Talin, Li, Dalin, Yan, Xiaofei, Mengesha, Emebet, Rich, Stephan S., Onengut-Gumuscu, Suna, Chen, Wei-Min, Shih, David Q., Li, XiaoXiao, McGovern, Jane F., Ippoliti, Andrew, Dubinsky, Marl

Journal:

Gastroenterology

Year:

2014

Language:

english

File:

PDF, 65 KB

english, 2014

10

Su1750 Transethnic Fine-Mapping of the IL12B Locus Identifies Two Independent Signals Associated With IBD Susceptibility and Disease Behaviors

Kakuta, Yoichi, Dubinsky, Marla, Li, Dalin, Song, Kyuyoung, Yang, Suk-Kyun, Ye, Byong Duk, Rich, Stephen S., Onengut-Gumuscu, Suna, Torres, Esther A., Panikkath, Deepa, Haritunians, Talin, Targan, Ste

Journal:

Gastroenterology

Year:

2013

Language:

english

File:

PDF, 64 KB

english, 2013

11

Su1746 Rare Variants of TNFSF15 Are Significantly Associated With Crohn's Disease in Non-Jewish Caucasian Independent of the Known Common Susceptibility SNPs

Kakuta, Yoichi, Song, Kyuyoung, Yang, Suk-Kyun, Ye, Byong Duk, Torres, Esther A., Rich, Stephen S., Onengut-Gumuscu, Suna, Dubinsky, Marla, Taylor, Kent D., Rotter, Jerome I., Haritunians, Talin, Targ

Journal:

Gastroenterology

Year:

2013

Language:

english

File:

PDF, 151 KB

english, 2013

12

A hybrid qPCR/SNP array approach allows cost efficient assessment of KIR gene copy numbers in large samples

Pontikos, Nikolas, Smyth, Deborah J, Schuilenburg, Helen, Howson, Joanna MM, Walker, Neil M, Burren, Oliver S, Guo, Hui, Onengut-Gumuscu, Suna, Chen, Wei-Min, Concannon, Patrick, Rich, Stephen S, Jaya

Journal:

Year:

2014

Language:

english

File:

PDF, 1.03 MB

english, 2014

13

Fine Mapping and Functional Studies of Risk Variants for Type 1 Diabetes at Chromosome 16p13.13

Tomlinson, M. J., Pitsillides, A., Pickin, R., Mika, M., Keene, K. L., Hou, X., Mychaleckyj, J., Chen, W.-M., Concannon, P., Onengut-Gumuscu, S.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.88 MB

english, 2014

14

A Method for Gene-Based Pathway Analysis Using Genomewide Association Study Summary Statistics Reveals Nine New Type 1 Diabetes Associations

Evangelou, Marina, Smyth, Deborah J., Fortune, Mary D., Burren, Oliver S., Walker, Neil M., Guo, Hui, Onengut-Gumuscu, Suna, Chen, Wei-Min, Concannon, Patrick, Rich, Stephen S., Todd, John A., Wallace

Journal:

Genetic Epidemiology

Year:

2014

Language:

english

File:

PDF, 207 KB

english, 2014

15

Role of Type 1 Diabetes–Associated SNPs on Risk of Autoantibody Positivity in the TEDDY Study

Törn, Carina, Hadley, David, Lee, Hye-Seung, Hagopian, William, Lernmark, Åke, Simell, Olli, Rewers, Marian, Ziegler, Anette, Schatz, Desmond, Akolkar, Beena, Onengut-Gumuscu, Suna, Chen, Wei-Min, Top

Journal:

Year:

2015

Language:

english

File:

PDF, 771 KB

english, 2015

16

Evidence for two independent associations with type 1 diabetes at the 12q13 locus

Keene, K L, Quinlan, A R, Hou, X, Hall, I M, Mychaleckyj, J C, Onengut-Gumuscu, S, Concannon, P

Journal:

Genes and Immunity

Year:

2012

Language:

english

File:

PDF, 243 KB

english, 2012

17

Genetic Variation in PTPN22 Corresponds to Altered Function of T and B Lymphocytes

Rieck, M., Arechiga, A., Onengut-Gumuscu, S., Greenbaum, C., Concannon, P., Buckner, J. H.

Journal:

The Journal of Immunology

Year:

2007

Language:

english

File:

PDF, 740 KB

english, 2007

18

A Human Type 1 Diabetes Susceptibility Locus Maps to Chromosome 21q22.3

Concannon, P., Onengut-Gumuscu, S., Todd, J. A., Smyth, D. J., Pociot, F., Bergholdt, R., Akolkar, B., Erlich, H. A., Hilner, J. E., Julier, C., Morahan, G., Nerup, J., Nierras, C. R., Chen, W.-M., Ri

Journal:

Year:

2008

Language:

english

File:

PDF, 64 KB

english, 2008

19

Cytomegalovirus infection enhances the immune response to influenza

Furman, D., Jojic, V., Sharma, S., Shen-Orr, S. S., L. Angel, C. J., Onengut-Gumuscu, S., Kidd, B. A., Maecker, H. T., Concannon, P., Dekker, C. L., Thomas, P. G., Davis, M. M.

Journal:

Science Translational Medicine

Year:

2015

Language:

english

File:

PDF, 620 KB

english, 2015

20

HLA-DPB1*04:01 Protects Genetically Susceptible Children from Celiac Disease Autoimmunity in the TEDDY Study

Hadley, David, Hagopian, William, Liu, Edwin, She, Jin-Xiong, Simell, Olli, Akolkar, Beena, Ziegler, Anette-G, Rewers, Marian, Krischer, Jeffrey P, Chen, Wei-Min, Onengut-Gumuscu, Suna, Bugawan, Teodo

Journal:

American Journal of Gastroenterology

Year:

2015

Language:

english

File:

PDF, 131 KB

english, 2015

21

A Haplotype-Based Analysis of the PTPN22 Locus in Type 1 Diabetes

Onengut-Gumuscu, S., Buckner, J. H., Concannon, P.

Journal:

Year:

2006

Language:

english

File:

PDF, 111 KB

english, 2006

22

Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers

Onengut-Gumuscu, Suna, Chen, Wei-Min, Burren, Oliver, Cooper, Nick J, Quinlan, Aaron R, Mychaleckyj, Josyf C, Farber, Emily, Bonnie, Jessica K, Szpak, Michal, Schofield, Ellen, Achuthan, Premanand, Gu

Journal:

Nature Genetics

Year:

2015

Language:

english

File:

PDF, 906 KB

english, 2015

23

Recent Progress in the Genetics of Diabetes

Rich, Stephen S., Onengut-Gumuscu, Suna, Concannon, Patrick

Journal:

Hormone Research

Year:

2009

Language:

english

File:

PDF, 133 KB

english, 2009

24

A Genome-Wide Assessment of the Role of Untagged Copy Number Variants in Type 1 Diabetes

Zanda, Manuela, Onengut-Gumuscu, Suna, Walker, Neil, Shtir, Corina, Gallo, Daniel, Wallace, Chris, Smyth, Deborah, Todd, John A., Hurles, Matthew E., Plagnol, Vincent, Rich, Stephen S., Cotsapas, Chri

Journal:

Year:

2014

Language:

english

File:

PDF, 985 KB

english, 2014

25

Additive and interaction effects at three amino acid positions in HLA-DQ and HLA-DR molecules drive type 1 diabetes risk

Hu, Xinli, Deutsch, Aaron J, Lenz, Tobias L, Onengut-Gumuscu, Suna, Han, Buhm, Chen, Wei-Min, Howson, Joanna M M, Todd, John A, de Bakker, Paul I W, Rich, Stephen S, Raychaudhuri, Soumya

Journal:

Nature Genetics

Year:

2015

Language:

english

File:

PDF, 1.35 MB

english, 2015

26

Targeted Deep Sequencing in Multiple-Affected Sibships of European Ancestry Identifies Rare Deleterious Variants in PTPN22 that Confer Risk for Type 1 Diabetes

Ge, Yan, Onengut-Gumuscu, Suna, Quinlan, Aaron R., Mackey, Aaron J., Wright, Jocyndra A., Buckner, Jane H., Habib, Tania, Rich, Stephen S., Concannon, Patrick

Journal:

Year:

2015

Language:

english

File:

PDF, 1.95 MB

english, 2015

27

Genetic linkage of hyperglycemia and dyslipidemia in an intercross between BALB/cJ and SM/JApoe-deficient mouse strains

Wang, Qian, Grainger, Andrew T., Manichaikul, Ani, Farber, Emily, Onengut-Gumuscu, Suna, Shi, Weibin

Journal:

Year:

2015

Language:

english

File:

PDF, 2.69 MB

english, 2015

28

Complement gene variants in relation to autoantibodies to beta cell specific antigens and type 1 diabetes in the TEDDY Study

Törn, Carina, Liu, Xiang, Hagopian, William, Lernmark, Åke, Simell, Olli, Rewers, Marian, Ziegler, Anette-G, Schatz, Desmond, Akolkar, Beena, Onengut-Gumuscu, Suna, Chen, Wei-Min, Toppari, Jorma, Mykk

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 534 KB

english, 2016

29

Macrophages redirect phagocytosis by non-professional phagocytes and influence inflammation

Han, Claudia Z., Juncadella, Ignacio J., Kinchen, Jason M., Buckley, Monica W., Klibanov, Alexander L., Dryden, Kelly, Onengut-Gumuscu, Suna, Erdbrügger, Uta, Turner, Stephen D., Shim, Yun M., Tung, K

Journal:

Year:

2016

Language:

english

File:

PDF, 5.23 MB

english, 2016

30

Plasma Soluble Receptor for Advanced Glycation Endproducts in Idiopathic Pulmonary Fibrosis

Manichaikul, Ani, Sun, Li, Borczuk, Alain C, Onengut-Gumuscu, Suna, Farber, Emily A, Mathai, Susan K., Zhang, Weiming, Raghu, Ganesh, Kaufman, Joel D., Hinckley-Stukovsky, Karen D, Kawut, Steven M., J

Journal:

Annals of the American Thoracic Society

Year:

2017

Language:

english

File:

PDF, 481 KB

english, 2017

31

Microbiota alteration is associated with the development of stress-induced despair behavior

Marin, Ioana A., Goertz, Jennifer E., Ren, Tiantian, Rich, Stephen S., Onengut-Gumuscu, Suna, Farber, Emily, Wu, Martin, Overall, Christopher C., Kipnis, Jonathan, Gaultier, Alban

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.14 MB

english, 2017

32

Can non-HLA Single Nucleotide Polymorphisms Help Stratify Risk in TrialNet Relatives at Risk for Type 1 Diabetes?

Steck, Andrea K., Xu, Ping, Geyer, Susan, Redondo, Maria J., Antinozzi, Peter, Wentworth, John M., Sosenko, Jay, Onengut-Gumuscu, Suna, Chen, Wei-Min, Rich, Stephen S., Pugliese, Alberto

Journal:

Journal of Clinical Endocrinology & Metabolism

Year:

2017

Language:

english

File:

PDF, 3.09 MB

english, 2017

33

Disease-specific biases in alternative splicing and tissue-specific dysregulation revealed by multitissue profiling of lymphocyte gene expression in type 1 diabetes

Newman, Jeremy R.B., Conesa, Ana, Mika, Matthew, New, Felicia N., Onengut-Gumuscu, Suna, Atkinson, Mark A., Rich, Stephen S., McIntyre, Lauren M., Concannon, Patrick

Journal:

Genome Research

Year:

2017

Language:

english

File:

PDF, 2.36 MB

english, 2017

34

Neuromedin B expression defines the mouse retrotrapezoid nucleus

Shi, Yingtang, Stornetta, Ruth L., Stornetta, Daniel S., Onengut-Gumuscu, Suna, Farber, Emily A., Turner, Stephen D., Guyenet, Patrice G., Bayliss, Douglas A.

Journal:

Journal of Neuroscience

Year:

2017

Language:

english

File:

PDF, 4.23 MB

english, 2017

35

Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort

Sharma, Ashok, Liu, Xiang, Hadley, David, Hagopian, William, Chen, Wei-Min, Onengut-Gumuscu, Suna, Törn, Carina, Steck, Andrea K., Frohnert, Brigitte I., Rewers, Marian, Ziegler, Anette-G., Lernmark,

Journal:

Journal of Autoimmunity

Year:

2018

Language:

english

File:

PDF, 3.12 MB

english, 2018

36

Context-dependent compensation among phosphatidylserine-recognition receptors

Penberthy, Kristen K., Rival, Claudia, Shankman, Laura S., Raymond, Michael H., Zhang, Jianye, Perry, Justin S. A., Lee, Chang Sup, Han, Claudia Z., Onengut-Gumuscu, Suna, Palczewski, Krzysztof, Lysia

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.89 MB

english, 2017

37

Identification of Non-HLA Genes Associated with Celiac Disease and Country-Specific Differences in a Large, International Pediatric Cohort

Sharma, Ashok, Liu, Xiang, Hadley, David, Hagopian, William, Liu, Edwin, Chen, Wei-Min, Onengut-Gumuscu, Suna, Simell, Ville, Rewers, Marian, Ziegler, Anette-G., Lernmark, Åke, Simell, Olli, Toppari,

Journal:

Year:

2016

Language:

english

File:

PDF, 3.77 MB

english, 2016

38

Imputing Amino Acid Polymorphisms in Human Leukocyte Antigens

Jia, Xiaoming, Han, Buhm, Onengut-Gumuscu, Suna, Chen, Wei-Min, Concannon, Patrick J., Rich, Stephen S., Raychaudhuri, Soumya, de Bakker, Paul I.W., Tang, Jianming

Journal:

Year:

2013

Language:

english

File:

PDF, 1.46 MB

english, 2013

39

Functional aspects of meningeal lymphatics in ageing and Alzheimer’s disease

Da Mesquita, Sandro, Louveau, Antoine, Vaccari, Andrea, Smirnov, Igor, Cornelison, R. Chase, Kingsmore, Kathryn M., Contarino, Christian, Onengut-Gumuscu, Suna, Farber, Emily, Raper, Daniel, Viar, Ken

Journal:

Year:

2018

Language:

english

File:

PDF, 89.73 MB

english, 2018

40

Fine-mapping and functional studies highlight potential causal variants for rheumatoid arthritis and type 1 diabetes

Westra, Harm-Jan, Martínez-Bonet, Marta, Onengut-Gumuscu, Suna, Lee, Annette, Luo, Yang, Teslovich, Nikola, Worthington, Jane, Martin, Javier, Huizinga, Tom, Klareskog, Lars, Rantapaa-Dahlqvist, Solbr

Journal:

Nature Genetics

Year:

2018

Language:

english

File:

PDF, 5.14 MB

english, 2018

41

Publisher Correction: Functional aspects of meningeal lymphatics in ageing and Alzheimer’s disease

Da Mesquita, Sandro, Louveau, Antoine, Vaccari, Andrea, Smirnov, Igor, Cornelison, R. Chase, Kingsmore, Kathryn M., Contarino, Christian, Onengut-Gumuscu, Suna, Farber, Emily, Raper, Daniel, Viar, Ken

Journal:

Year:

2018

File:

PDF, 330 KB

2018

42

Efferocytosis induces a novel SLC program to promote glucose uptake and lactate release

Morioka, Sho, Perry, Justin S. A., Raymond, Michael H., Medina, Christopher B., Zhu, Yunlu, Zhao, Liyang, Serbulea, Vlad, Onengut-Gumuscu, Suna, Leitinger, Norbert, Kucenas, Sarah, Rathmell, Jeffrey C

Journal:

Year:

2018

Language:

english

File:

PDF, 12.20 MB

english, 2018

43

Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations

Márquez, Ana, Kerick, Martin, Zhernakova, Alexandra, Gutierrez-Achury, Javier, Chen, Wei-Min, Onengut-Gumuscu, Suna, González-Álvaro, Isidoro, Rodriguez-Rodriguez, Luis, Rios-Fernández, Raquel, Gonzál

Journal:

Genome Medicine

Year:

2018

Language:

english

File:

PDF, 1.58 MB

english, 2018

44

The active contribution of OPCs to neuroinflammation is mediated by LRP1

Fernández-Castañeda, Anthony, Chappell, Megan S., Rosen, Dorian A, Seki, Scott M., Beiter, Rebecca M., Johanson, David M., Liskey, Delaney, Farber, Emily, Onengut-Gumuscu, Suna, Overall, Christopher C

Journal:

Acta Neuropathologica

Year:

2019

Language:

english

File:

PDF, 12.28 MB

english, 2019

45

Interpreting an apoptotic corpse as anti-inflammatory involves a chloride sensing pathway

Perry, Justin S. A., Morioka, Sho, Medina, Christopher B., Iker Etchegaray, J., Barron, Brady, Raymond, Michael H., Lucas, Christopher D., Onengut-Gumuscu, Suna, Delpire, Eric, Ravichandran, Kodi S.

Journal:

Nature Cell Biology

Year:

2019

File:

PDF, 7.07 MB

2019

46

Whole Genome Sequencing of Spontaneously Occurring Rat Natural Killer Large Granular Lymphocyte Leukemia Identifies JAK1 Somatic Activating Mutation

Wang, T. Tiffany, Yang, Jun, Dighe, Shubha, Schmachtenberg, Matthew W., Leigh, Nathan T., Farber, Emily, Onengut-Gumuscu, Suna, Feith, David J., Ratan, Aakrosh, Loughran, Thomas P., Olson, Thomas L.

Journal:

Year:

2020

File:

PDF, 1.67 MB

2020

47

[BMJ Publishing Group Ltd and European League Against Rheumatism Annual European Congress of Rheumatology, EULAR 2019, Madrid, 12â15 June 2019 - ()] Oral Presentations - OP0190âMETA-ANALYSIS OF IMMUNOCHIP DATA OF FOUR AUTOIMMUNE DISEASES REVEALS NOVEL SINGLE-DISEASE AND CROSS-PHENOTYPE ASSOCIATIONS

MÃ¡rquez, Ana, Kerick, Martin, Zhernakova, Alexandra, Gutierrez-Achury, Javier, Chen, Wei-Min, Onengut-Gumuscu, Suna, GonzÃ¡lez-Ãlvaro, Isidoro, Rodriguez-Rodriguez, Luis, GonzÃ¡lez-Gay, Miguel A, Ma

Year:

2019

File:

PDF, 44 KB

2019

48

Novel genetic risk factors influence progression of islet autoimmunity to type 1 diabetes

Onengut-Gumuscu, Suna, Paila, Umadevi, Chen, Wei-Min, Ratan, Aakrosh, Zhu, Zhennan, Steck, Andrea K., Frohnert, Brigitte I., Waugh, Kathleen C., Webb-Robertson, Bobbie-Jo M., Norris, Jill M., Lange, L

Journal:

Scientific Reports

Year:

2020

File:

PDF, 2.46 MB

2020